Why wouldn't she bark? She's a baby and completely away from you, I wouldn't blame her for barking and crying. I would also suggest getting a crate with a soft bed and some toys, put it next to your bed. Of course, she will cry for the first few days or weeks, but I promise she will adjust.
All the crying and barking comes with adding a new baby into your lives, just as a real baby would.
Just make sure you take her potty at least 3 times in the middle of the night. Maybe put a yummy treat in with her every time she goes back in the crate. This is what I did and eventually they looked forward to going back in there.
Good luck and keep us updated