crate near your bed
Harry cried a little bit for the first 2 nights we had him at home (at 8 weeks). We spoke to him when he cried to reassure him that we were there and also reached down to touch the crate beside the bed. This seemed to appease him. Then the third night he didn't cry, so we figured we could move his crate to the family room rather than in our bedroom where it had spent the first 3 nights.
Well, the night in the family room, he cried all night long - very soulful, lonely cries/howls. We just let him cry the whole night.
So, the following night we put him beside our bed, in his crate, and that is where he has been ever since. We decided that since he is crated during the day when we are at work (we have a dog walker who comes in twice to let him out, feed him, walk him, etc) we should give him the chance to be with us as much as possible when we are home, whether we're awake or asleep. He never cries and he doesn't need to get up in the middle of the night to pee. He goes to bed at around 10:00 and we wake him up around 5:15 to go out for a pee.
Try putting the crate by your bed. I'm sure it will help.